Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs147178667 | chr20:3342016 | AG/A | 1.08E-7 | 405 | 15.95 | 11.55 | 6.83 | KM Plot |
| LGG | rs147201219 | chr6:33799602 | A/ATG | 2.48E-5 | 404 | 15.17 | 16.77 | 11.42 | KM Plot |
| LGG | rs147404416 | chr6:36002540 | C/CT | 1.01E-9 | 406 | 15.57 | 15.17 | 6.15 | KM Plot |
| LGG | rs147412551 | chr11:2990595 | T/TACAC | 0.000168 | 398 | 15.6 | 13.7 | 11.8 | KM Plot |
| LGG | rs147459836 | chr14:23325856 | A/AT | 3.93E-5 | 400 | 15.73 | 15.7 | 11.17 | KM Plot |
| LGG | rs147556443 | chr8:49708033 | A/T | 6.66E-16 | 405 | 15.67 | 13.75 | 5.17 | KM Plot |
| LGG | rs147619699 | chr4:84470143 | AC/A | 0 | 394 | 15.17 | 18.13 | 5.17 | KM Plot |
| LGG | rs147672941 | chr6:36057914 | A/AT | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs147779328 | chr7:64934077 | T/A | 9.18E-8 | 400 | 15.57 | 15.2 | 2.27 | KM Plot |
| LGG | rs147791143 | chr5:156004668 | A/G | 9.05E-5 | 403 | 15.45 | 15.17 | 13.5 | KM Plot |
| LGG | rs147920383 | chr6:56961599 | A/T | 3.69E-6 | 402 | 15.25 | 15.3 | 7.8 | KM Plot |
| LGG | rs147920423 | chr7:55901002 | C/A | 0 | 403 | 15.18 | 16.08 | 3.77 | KM Plot |
| LGG | rs147943975 | chr7:56039995 | C/T | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs148048531 | chr20:3098510 | C/T | 2.57E-5 | 396 | 15.13 | 19.42 | 4.77 | KM Plot |
| LGG | rs148137967 | chr19:23557360 | T/G | 2.97E-6 | 407 | 15.25 | 15.67 | 7.8 | KM Plot |